HL_5M1J_083
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CCAAGG
- Length
- 6 nucleotides
- Bulged bases
- 5M1J|1|22|A|416
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5M1J_083 not in the Motif Atlas
- Homologous match to HL_4V88_196
- Geometric discrepancy: 0.2208
- The information below is about HL_4V88_196
- Detailed Annotation
- UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_34617.1
- Basepair signature
- cWW-tSW-F
- Number of instances in this motif group
- 57
Unit IDs
5M1J|1|22|C|414
5M1J|1|22|C|415
5M1J|1|22|A|416
5M1J|1|22|A|417
5M1J|1|22|G|418
5M1J|1|22|G|419
Current chains
- Chain 22
- 18S ribosomal RNA
Nearby chains
- Chain A6
- Protein HBS1
- Chain G2
- 40S ribosomal protein S6-A
- Chain V5
- 60S ribosomal protein L23-A
- Chain Y2
- 40S ribosomal protein S24-A
Coloring options: