HL_5M1J_089

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCUAACCUUGAGUCCUUGUGGCUCUUGGCGAAC

Length

33 nucleotides

Bulged bases

5M1J|1|22|U|705, 5M1J|1|22|U|719, 5M1J|1|22|G|729, 5M1J|1|22|G|732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5M1J|1|22|G|703
5M1J|1|22|C|704
5M1J|1|22|U|705
5M1J|1|22|A|706
5M1J|1|22|A|707
5M1J|1|22|C|708
5M1J|1|22|C|709
5M1J|1|22|U|710
5M1J|1|22|U|711
5M1J|1|22|G|712
5M1J|1|22|A|713
5M1J|1|22|G|714
5M1J|1|22|U|715
5M1J|1|22|C|716
5M1J|1|22|C|717
5M1J|1|22|U|718
5M1J|1|22|U|719
5M1J|1|22|G|720
5M1J|1|22|U|721
5M1J|1|22|G|722
5M1J|1|22|G|723
5M1J|1|22|C|724
5M1J|1|22|U|725
5M1J|1|22|C|726
5M1J|1|22|U|727
5M1J|1|22|U|728
5M1J|1|22|G|729
5M1J|1|22|G|730
5M1J|1|22|C|731
5M1J|1|22|G|732
5M1J|1|22|A|733
5M1J|1|22|A|734
5M1J|1|22|C|735

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain E2

40S ribosomal protein S4-A

Chain G2

40S ribosomal protein S6-A