HL_5M1J_090
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UGUUCAAAG
- Length
- 9 nucleotides
- Bulged bases
- 5M1J|1|22|G|765
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5M1J_090 not in the Motif Atlas
- Homologous match to HL_4V88_203
- Geometric discrepancy: 0.0993
- The information below is about HL_4V88_203
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47383.2
- Basepair signature
- cWW-F-F-cWW-F-F
- Number of instances in this motif group
- 11
Unit IDs
5M1J|1|22|U|764
5M1J|1|22|G|765
5M1J|1|22|U|766
5M1J|1|22|U|767
5M1J|1|22|C|768
5M1J|1|22|A|769
5M1J|1|22|A|770
5M1J|1|22|A|771
5M1J|1|22|G|772
Current chains
- Chain 22
- 18S ribosomal RNA
Nearby chains
- Chain E2
- 40S ribosomal protein S4-A
- Chain J2
- 40S ribosomal protein S9-A
- Chain Y2
- 40S ribosomal protein S24-A
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