HL_5M1J_091

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUAUUG

Length

7 nucleotides

Bulged bases

5M1J|1|22|U|779

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_091 not in the Motif Atlas

Homologous match to HL_8P9A_207

Geometric discrepancy: 0.4646

The information below is about HL_8P9A_207

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.6

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

5M1J|1|22|C|777
5M1J|1|22|G|778
5M1J|1|22|U|779
5M1J|1|22|A|780
5M1J|1|22|U|781
5M1J|1|22|U|782
5M1J|1|22|G|783

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain Y2

40S ribosomal protein S24-A