HL_5M1J_112
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 5M1J|1|44|C|84, 5M1J|1|44|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5M1J_112 not in the Motif Atlas
- Homologous match to HL_8P9A_187
- Geometric discrepancy: 0.2009
- The information below is about HL_8P9A_187
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_68571.1
- Basepair signature
- cWW-tSH-tHS-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5M1J|1|44|U|69
5M1J|1|44|G|70
5M1J|1|44|A|71
5M1J|1|44|A|72
5M1J|1|44|U|73
5M1J|1|44|U|74
5M1J|1|44|G|75
5M1J|1|44|C|76
5M1J|1|44|A|77
5M1J|1|44|G|78
5M1J|1|44|A|79
5M1J|1|44|A|80
5M1J|1|44|U|81
5M1J|1|44|U|82
5M1J|1|44|C|83
5M1J|1|44|C|84
5M1J|1|44|G|85
5M1J|1|44|U|86
5M1J|1|44|G|87
5M1J|1|44|A|88
5M1J|1|44|A|89
Current chains
- Chain 44
- 5.8S ribosomal RNA
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain Y5
- 60S ribosomal protein L26-A
- Chain h5
- 60S ribosomal protein L35-A
- Chain j5
- 60S ribosomal protein L37-A
- Chain l5
- 60S ribosomal protein L39
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