HL_5M1J_117

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

G(5MU)(PSU)CG(1MA)UCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MU, PSU, 1MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_117 not in the Motif Atlas

Homologous match to HL_6CFJ_108

Geometric discrepancy: 0.1845

The information below is about HL_6CFJ_108

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

5M1J|1|A3|G|53
5M1J|1|A3|5MU|54
5M1J|1|A3|PSU|55
5M1J|1|A3|C|56
5M1J|1|A3|G|57
5M1J|1|A3|1MA|58
5M1J|1|A3|U|59
5M1J|1|A3|C|60
5M1J|1|A3|C|61

Current chains

Chain A3

yeast Phe-tRNA-Phe

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain J5

60S ribosomal protein L11-A

Chain o5

60S ribosomal protein L42-B