HL_5M1J_118
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GCCUCGGU
- Length
- 8 nucleotides
- Bulged bases
- 5M1J|1|14|U|545, 5M1J|1|14|C|546
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5M1J_118 not in the Motif Atlas
- Homologous match to HL_8P9A_124
- Geometric discrepancy: 0.3536
- The information below is about HL_8P9A_124
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5M1J|1|14|G|542
5M1J|1|14|C|543
5M1J|1|14|C|544
5M1J|1|14|U|545
5M1J|1|14|C|546
5M1J|1|14|G|547
5M1J|1|14|G|548
5M1J|1|14|U|549
Current chains
- Chain 14
- 25S ribosomal RNA
Nearby chains
- Chain H5
- 60S ribosomal protein L9-A
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