HL_5M1J_120

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUCUUGUAG

Length

9 nucleotides

Bulged bases

5M1J|1|14|U|2067, 5M1J|1|14|U|2068

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_120 not in the Motif Atlas

Geometric match to HL_5J7L_151

Geometric discrepancy: 0.3327

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

5M1J|1|14|C|2064
5M1J|1|14|U|2065
5M1J|1|14|C|2066
5M1J|1|14|U|2067
5M1J|1|14|U|2068
5M1J|1|14|G|2069
5M1J|1|14|U|2070
5M1J|1|14|A|2071
5M1J|1|14|G|2072

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain k5

60S ribosomal protein L38