HL_5M1J_125

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCUCGG

Length

6 nucleotides

Bulged bases

5M1J|1|14|U|545, 5M1J|1|14|C|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_125 not in the Motif Atlas

Homologous match to HL_8P9A_231

Geometric discrepancy: 0.4454

The information below is about HL_8P9A_231

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13189.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

5M1J|1|14|C|543
5M1J|1|14|C|544
5M1J|1|14|U|545
5M1J|1|14|C|546
5M1J|1|14|G|547
5M1J|1|14|G|548

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain H5

60S ribosomal protein L9-A