HL_5M73_003

3D structure

PDB id

5M73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human SRP S domain with SRP72 RNA-binding domain

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGGAGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M73_003 not in the Motif Atlas

Homologous match to HL_1MFQ_001

Geometric discrepancy: 0.1696

The information below is about HL_1MFQ_001

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

5M73|1|E|G|146
5M73|1|E|G|147
5M73|1|E|G|148
5M73|1|E|A|149
5M73|1|E|G|150
5M73|1|E|C|151

Current chains

Chain E

Human gene for small cytoplasmic 7SL RNA (7L30.1)

Nearby chains

Chain F

Signal recognition particle 19 kDa protein