HL_5MC6_001
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUUGAUCCUGC
- Length
- 11 nucleotides
- Bulged bases
- 5MC6|1|2|U|9
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MC6_001 not in the Motif Atlas
- Homologous match to HL_4V88_186
- Geometric discrepancy: 0.1292
- The information below is about HL_4V88_186
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89881.2
- Basepair signature
- cWW-tHW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5MC6|1|2|G|7
5MC6|1|2|U|8
5MC6|1|2|U|9
5MC6|1|2|G|10
5MC6|1|2|A|11
5MC6|1|2|U|12
5MC6|1|2|C|13
5MC6|1|2|C|14
5MC6|1|2|U|15
5MC6|1|2|G|16
5MC6|1|2|C|17
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain R
- 40S ribosomal protein S2
- Chain c
- 40S ribosomal protein S23-A
- Chain e
- 40S ribosomal protein S26-A
- Chain l
- mRNA
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