5MC6 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5MC6_001 | 1/2/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_5MC6_002 | 1/2/70:81 | No text annotation | geometric HL_8C3A_054 NA | |
| HL_5MC6_003 | 1/2/154:160 | GNRA related | homologous HL_4V88_188 NA | |
| HL_5MC6_006 | 1/2/243:250 | T-loop with 1 bulged base | homologous HL_4V88_191 NA | |
| HL_5MC6_008 | 1/2/330:338 | GNRA related | homologous HL_4V88_193 NA | |
| HL_5MC6_009 | 1/2/368:373 | No text annotation | homologous HL_4V88_194 NA | |
| HL_5MC6_010 | 1/2/393:404 | No text annotation | homologous HL_4V88_195 NA | |
| HL_5MC6_011 | 1/2/414:419 | UNCG | homologous HL_4V88_196 NA | |
| HL_5MC6_012 | 1/2/450:456 | No text annotation | homologous HL_4V88_197 NA | |
| HL_5MC6_014 | 1/2/520:532 | No text annotation | geometric HL_4V88_199 NA | |
| HL_5MC6_015 | 1/2/569:574 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_5MC6_018 | 1/2/764:772 | No text annotation | homologous HL_4V88_203 NA | |
| HL_5MC6_020 | 1/2/829:843 | Pseudoknot geometry | homologous HL_4V88_205 NA | |
| HL_5MC6_021 | 1/2/900:909 | No text annotation | homologous HL_4V88_206 NA | |
| HL_5MC6_022 | 1/2/937:942 | GNRA | homologous HL_4V88_207 NA | |
| HL_5MC6_023 | 1/2/997:1007 | No text annotation | homologous HL_4V88_208 NA | |
| HL_5MC6_024 | 1/2/1055:1064 | No text annotation | geometric HL_2ZZM_002 HL_33487.1 | |
| HL_5MC6_025 | 1/2/1084:1089 | GNRA | homologous HL_4V88_210 NA | |
| HL_5MC6_026 | 1/2/1121:1126 | GNRA | homologous HL_4V88_211 NA | |
| HL_5MC6_027 | 1/2/1188:1197 | No text annotation | homologous HL_4V88_212 NA | |
| HL_5MC6_028 | 1/2/1238:1247 | Anticodon loop related | homologous HL_4V88_213 NA | |
| HL_5MC6_029 | 1/2/1296:1301 | GNRA | homologous HL_4V88_214 NA | |
| HL_5MC6_030 | 1/2/1309:1316 | No text annotation | homologous HL_4V88_215 NA | |
| HL_5MC6_032 | 1/2/1396:1402 | GNRA | homologous HL_4V88_217 NA | |
| HL_5MC6_034 | 1/2/1550:1561 | No text annotation | homologous HL_4V88_219 NA | |
| HL_5MC6_035 | 1/2/1594:1602 | No text annotation | homologous HL_4V88_220 NA | |
| HL_5MC6_037 | 1/2/1778:1783 | GNRA variation | homologous HL_4V88_222 NA | |
| HL_5MC6_038 | 1/BQ/38:45 | No text annotation | homologous HL_8C3A_001 NA | |
| HL_5MC6_039 | 1/BQ/69:74 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_5MC6_040 | 1/BQ/90:96 | No text annotation | homologous HL_5TBW_003 NA | |
| HL_5MC6_041 | 1/BQ/132:136 | No text annotation | geometric HL_5TBW_068 NA | |
| HL_5MC6_042 | 1/BQ/194:201 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_5MC6_043 | 1/BQ/208:212 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_5MC6_044 | 1/BQ/216:224 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_5MC6_045 | 1/BQ/278:287 | No text annotation | homologous HL_5TBW_008 NA | |
| HL_5MC6_046 | 1/BQ/303:312 | Pseudoknot geometry | geometric HL_4QLM_002 HL_00911.2 | |
| HL_5MC6_047 | 1/BQ/357:362 | GNRA | homologous HL_8C3A_010 NA | |
| HL_5MC6_048 | 1/BQ/382:387 | GNRA | homologous HL_8C3A_011 NA | |
| HL_5MC6_051 | 1/BQ/640:649 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_014 NA | |
| HL_5MC6_052 | 1/BQ/686:694 | No text annotation | homologous HL_8C3A_015 NA | |
| HL_5MC6_053 | 1/BQ/707:712 | GNRA | homologous HL_5TBW_016 NA | |
| HL_5MC6_056 | 1/BQ/844:849 | GNRA | homologous HL_5TBW_019 NA | |
| HL_5MC6_057 | 1/BQ/876:885 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_5MC6_058 | 1/BQ/910:918 | No text annotation | homologous HL_5TBW_021 NA | |
| HL_5MC6_059 | 1/BQ/958:963 | Externally structured | homologous HL_5TBW_022 NA | |
| HL_5MC6_061 | 1/BQ/1076:1083 | No text annotation | homologous HL_8C3A_024 NA | |
| HL_5MC6_062 | 1/BQ/1126:1132 | GNRA | homologous HL_8C3A_025 NA | |
| HL_5MC6_063 | 1/BQ/1148:1155 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_5MC6_066 | 1/BQ/1347:1357 | Mini UNCG | geometric HL_4OOG_001 HL_12626.2 | |
| HL_5MC6_067 | 1/BQ/1403:1408 | GNRA | homologous HL_5TBW_030 NA | |
| HL_5MC6_068 | 1/BQ/1462:1470 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_031 NA | |
| HL_5MC6_069 | 1/BQ/1506:1512 | Pseudoknot geometry with 3' bulge | homologous HL_5TBW_032 NA | |
| HL_5MC6_070 | 1/BQ/1544:1549 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_5MC6_072 | 1/BQ/1599:1608 | No text annotation | homologous HL_5TBW_035 NA | |
| HL_5MC6_073 | 1/BQ/1634:1639 | GNRA | homologous HL_8C3A_036 NA | |
| HL_5MC6_125 | 1/BQ/1680:1688 | Pseudoknot geometry | homologous HL_8P9A_148 HL_22758.1 | |
| HL_5MC6_075 | 1/BQ/1719:1725 | No text annotation | homologous HL_5TBW_038 NA | |
| HL_5MC6_077 | 1/BQ/1792:1796 | Mini UNCG | homologous HL_5TBW_040 NA | |
| HL_5MC6_078 | 1/BQ/1844:1851 | No text annotation | homologous HL_8C3A_041 NA | |
| HL_5MC6_079 | 1/BQ/1862:1868 | GNRA | homologous HL_5TBW_042 NA | |
| HL_5MC6_080 | 1/BQ/1923:1928 | UNCG | homologous HL_8C3A_043 NA | |
| HL_5MC6_082 | 1/BQ/2110:2114 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_5MC6_083 | 1/BQ/2135:2145 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_5MC6_084 | 1/BQ/2164:2170 | GNRA | homologous HL_8C3A_047 NA | |
| HL_5MC6_085 | 1/BQ/2220:2225 | GNRA | homologous HL_8C3A_048 NA | |
| HL_5MC6_086 | 1/BQ/2253:2263 | No text annotation | homologous HL_5TBW_049 NA | |
| HL_5MC6_087 | 1/BQ/2292:2300 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_5MC6_088 | 1/BQ/2369:2378 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_5MC6_092 | 1/BQ/2616:2624 | No text annotation | homologous HL_5TBW_054 NA | |
| HL_5MC6_093 | 1/BQ/2633:2645 | No text annotation | homologous HL_5TBW_055 NA | |
| HL_5MC6_094 | 1/BQ/2673:2681 | No text annotation | homologous HL_5TBW_056 NA | |
| HL_5MC6_095 | 1/BQ/2693:2700 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_5MC6_096 | 1/BQ/2724:2732 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_5MC6_097 | 1/BQ/2744:2749 | GNRA | homologous HL_5TBW_059 NA | |
| HL_5MC6_098 | 1/BQ/2776:2784 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_5MC6_099 | 1/BQ/2840:2848 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_5MC6_100 | 1/BQ/2897:2904 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_5MC6_101 | 1/BQ/2920:2926 | No text annotation | homologous HL_5TBW_063 NA | |
| HL_5MC6_102 | 1/BQ/2963:2968 | GNRA | homologous HL_5TBW_064 NA | |
| HL_5MC6_103 | 1/BQ/3025:3030 | GNRA | homologous HL_5TBW_065 NA | |
| HL_5MC6_104 | 1/BQ/3068:3073 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_5MC6_105 | 1/BQ/3110:3124 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_5MC6_107 | 1/BQ/3240:3247 | No text annotation | homologous HL_5TBW_069 NA | |
| HL_5MC6_108 | 1/BQ/3303:3311 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_5MC6_123 | 1/BR/32:45 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_5MC6_110 | 1/BR/36:41 | No text annotation | geometric HL_5TBW_185 NA | |
| HL_5MC6_111 | 1/BR/88:93 | GNRA | homologous HL_5TBW_186 NA | |
| HL_5MC6_124 | 1/BS/47:56 | No text annotation | homologous HL_8P4V_072 NA | |
| HL_5MC6_112 | 1/BS/69:89 | No text annotation | homologous HL_8P4V_073 NA | |
| HL_5MC6_113 | 1/BS/108:114 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_5MC6_114 | 1/BS/124:129 | No text annotation | homologous HL_5TBW_076 NA | |
| HL_5MC6_116 | 1/m/31:39 | tRNA anticodon loop | homologous HL_5IBB_210 HL_81376.3 | |
| HL_5MC6_117 | 1/m/53:61 | No text annotation | geometric HL_8C3A_039 NA | |
| HL_5MC6_118 | 1/n/13:22 | No text annotation | homologous HL_6PMO_003 NA | |
| HL_5MC6_119 | 1/n/31:39 | tRNA anticodon loop | homologous HL_4TUE_034 NA | |
| HL_5MC6_120 | 1/n/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5WWT_002 HL_33597.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5MC6_004 | No text annotation | ||
| HL_5MC6_005 | No text annotation | ||
| HL_5MC6_007 | Mini UNCG | ||
| HL_5MC6_013 | No text annotation | ||
| HL_5MC6_016 | No text annotation | ||
| HL_5MC6_121 | No text annotation | ||
| HL_5MC6_017 | No text annotation | ||
| HL_5MC6_019 | No text annotation | ||
| HL_5MC6_031 | Externally structured | ||
| HL_5MC6_033 | GNRA | ||
| HL_5MC6_036 | Externally structured | ||
| HL_5MC6_049 | No text annotation | ||
| HL_5MC6_050 | GNRA | ||
| HL_5MC6_054 | GNRA | ||
| HL_5MC6_055 | No text annotation | ||
| HL_5MC6_060 | GNRA | ||
| HL_5MC6_064 | No text annotation | ||
| HL_5MC6_065 | No text annotation | ||
| HL_5MC6_122 | No text annotation | ||
| HL_5MC6_071 | No text annotation | ||
| HL_5MC6_074 | No text annotation | ||
| HL_5MC6_076 | GNRA related | ||
| HL_5MC6_081 | No text annotation | ||
| HL_5MC6_089 | No text annotation | ||
| HL_5MC6_090 | No text annotation | ||
| HL_5MC6_091 | No text annotation | ||
| HL_5MC6_106 | No text annotation | ||
| HL_5MC6_109 | Mini UNCG | ||
| HL_5MC6_115 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5MC6_001 | 1/2/24:26, 1/2/600:601 | Single bulged C | homologous IL_4V88_384 NA | |
| IL_5MC6_002 | 1/2/35:37, 1/2/471:473 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
| IL_5MC6_003 | 1/2/37:41, 1/2/466:471 | Triple sheared related | geometric IL_4V88_386 NA | |
| IL_5MC6_004 | 1/2/42:52, 1/2/428:433 | No text annotation | ||
| IL_5MC6_005 | 1/2/58:63, 1/2/87:89 | No text annotation | homologous IL_4V88_389 NA | |
| IL_5MC6_006 | 1/2/64:69, 1/2/82:86 | No text annotation | homologous IL_4V88_390 NA | |
| IL_5MC6_007 | 1/2/109:112, 1/2/302:305 | Tandem non-canonical cWW pairs | homologous IL_4V88_391 NA | |
| IL_5MC6_008 | 1/2/113:117, 1/2/299:301 | Isolated non-canonical cWW pair | geometric IL_1XJR_003 IL_01003.3 | |
| IL_5MC6_251 | 1/2/113:122, 1/2/295:301 | No text annotation | ||
| IL_5MC6_009 | 1/2/117:122, 1/2/295:299 | No text annotation | geometric IL_4V88_393 NA | |
| IL_5MC6_228 | 1/2/144:149, 1/2/165:171 | tWH-tWH-tHW-tHW | geometric IL_4LFB_009 IL_00680.1 | |
| IL_5MC6_011 | 1/2/150:152, 1/2/162:164 | Isolated non-canonical cWW contact | homologous IL_4V88_395 NA | |
| IL_5MC6_012 | 1/2/186:189, 1/2/196:199 | No text annotation | ||
| IL_5MC6_229 | 1/2/186:190, 1/2/195:199 | No text annotation | ||
| IL_5MC6_015 | 1/2/265:267, 1/2/288:289 | Single bulged A | homologous IL_4V88_399 NA | |
| IL_5MC6_018 | 1/2/311:316, 1/2/348:355 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_5MC6_019 | 1/2/318:323, 1/2/345:346 | No text annotation | homologous IL_4V88_403 NA | |
| IL_5MC6_020 | 1/2/361:365, 1/2/376:383 | No text annotation | ||
| IL_5MC6_021 | 1/2/389:391, 1/2/406:408 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_5MC6_022 | 1/2/411:413, 1/2/420:422 | Isolated near basepair | homologous IL_4V88_406 NA | |
| IL_5MC6_024 | 1/2/443:447, 1/2/460:461 | C-loop | geometric IL_5J7L_018 NA | |
| IL_5MC6_025 | 1/2/447:448, 1/2/458:460 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_5MC6_029 | 1/2/550:557, 1/2/587:588 | SSU/LSU pseudoknot | geometric IL_5J7L_024 NA | |
| IL_5MC6_030 | 1/2/557:559, 1/2/586:587 | Single bulged U | geometric IL_5TBW_146 NA | |
| IL_5MC6_031 | 1/2/562:568, 1/2/575:583 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_5MC6_032 | 1/2/616:622, 1/2/1104:1105 | No text annotation | homologous IL_4V88_416 NA | |
| IL_5MC6_033 | 1/2/624:626, 1/2/973:975 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_5MC6_234 | 1/2/627:631, 1/2/968:972 | tSH-tHW-tHS | homologous IL_8C3A_428 NA | |
| IL_5MC6_037 | 1/2/746:747, 1/2/802:805 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
| IL_5MC6_038 | 1/2/748:750, 1/2/799:801 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_5MC6_039 | 1/2/751:759, 1/2/791:798 | No text annotation | homologous IL_4V88_425 NA | |
| IL_5MC6_041 | 1/2/865:866, 1/2/962:965 | Major groove platform; stack outside cWW | geometric IL_4V88_428 NA | |
| IL_5MC6_042 | 1/2/868:870, 1/2/957:960 | Isolated non-canonical cWW pair | geometric IL_3TD0_002 NA | |
| IL_5MC6_043 | 1/2/871:874, 1/2/953:956 | Tandem non-canonical cWW pairs | geometric IL_4V88_430 NA | |
| IL_5MC6_044 | 1/2/874:878, 1/2/950:953 | Tandem non-canonical cWW pairs | homologous IL_4V88_431 NA | |
| IL_5MC6_045 | 1/2/886:888, 1/2/924:926 | Isolated non-canonical cWW pair | geometric IL_4V88_472 NA | |
| IL_5MC6_046 | 1/2/893:899, 1/2/910:919 | Kink-turn related | homologous IL_8C3A_440 NA | |
| IL_5MC6_047 | 1/2/985:990, 1/2/1014:1016 | Other IL | homologous IL_4V88_435 NA | |
| IL_5MC6_048 | 1/2/990:994, 1/2/1010:1014 | tSH-tHW-tHS | geometric IL_4V88_436 NA | |
| IL_5MC6_049 | 1/2/1034:1036, 1/2/1095:1101 | No text annotation | homologous IL_4V88_437 NA | |
| IL_5MC6_050 | 1/2/1041:1044, 1/2/1074:1077 | Tandem non-canonical cWW pairs | homologous IL_4V88_438 NA | |
| IL_5MC6_051 | 1/2/1051:1053, 1/2/1066:1067 | Single bulged U | homologous IL_4V88_439 NA | |
| IL_5MC6_052 | 1/2/1111:1118, 1/2/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_5MC6_053 | 1/2/1146:1147, 1/2/1630:1632 | Single bulged A | homologous IL_4V88_441 NA | |
| IL_5MC6_054 | 1/2/1149:1151, 1/2/1627:1628 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_5MC6_055 | 1/2/1157:1160, 1/2/1617:1621 | C-loop | homologous IL_4V88_443 NA | |
| IL_5MC6_056 | 1/2/1173:1175, 1/2/1464:1466 | Isolated non-canonical cWW pair | geometric IL_4LFB_063 IL_01003.3 | |
| IL_5MC6_057 | 1/2/1177:1179, 1/2/1459:1462 | Decoding loop related | geometric IL_2O3X_003 IL_53541.1 | |
| IL_5MC6_058 | 1/2/1213:1215, 1/2/1448:1450 | Isolated cWH basepair | geometric IL_3FOZ_001 NA | |
| IL_5MC6_059 | 1/2/1222:1230, 1/2/1257:1261 | No text annotation | ||
| IL_5MC6_252 | 1/2/1224:1233, 1/2/1252:1259 | No text annotation | homologous IL_8P9A_470 IL_28304.1 | |
| IL_5MC6_060 | 1/2/1230:1233, 1/2/1252:1257 | No text annotation | ||
| IL_5MC6_062 | 1/2/1268:1270, 1/2/1440:1441 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_5MC6_063 | 1/2/1272:1276, 1/2/1436:1438 | Isolated cWS basepair | geometric IL_4V88_450 NA | |
| IL_5MC6_239 | 1/2/1272:1278, 1/2/1430:1438 | No text annotation | homologous IL_8P9A_439 IL_99893.1 | |
| IL_5MC6_064 | 1/2/1276:1278, 1/2/1430:1436 | Minor groove platform with extra cWW | homologous IL_4V88_451 NA | |
| IL_5MC6_065 | 1/2/1280:1281, 1/2/1426:1428 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_5MC6_066 | 1/2/1290:1292, 1/2/1323:1325 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_5MC6_067 | 1/2/1306:1308, 1/2/1317:1318 | Minor groove platform | homologous IL_4V88_454 NA | |
| IL_5MC6_068 | 1/2/1339:1342, 1/2/1383:1385 | Isolated non-canonical cWW pair | homologous IL_4V88_455 NA | |
| IL_5MC6_069 | 1/2/1345:1348, 1/2/1377:1380 | Minor groove platform | homologous IL_4V88_456 NA | |
| IL_5MC6_071 | 1/2/1389:1391, 1/2/1407:1412 | Major groove platform; stack outside cWW | homologous IL_4V88_458 NA | |
| IL_5MC6_253 | 1/2/1479:1487, 1/2/1519:1528 | No text annotation | homologous IL_8CRE_462 IL_91698.1 | |
| IL_5MC6_072 | 1/2/1488:1494, 1/2/1513:1518 | 180 degree turn | homologous IL_4V88_460 NA | |
| IL_5MC6_073 | 1/2/1495:1498, 1/2/1509:1512 | Tandem non-canonical cWW pairs | homologous IL_4V88_461 NA | |
| IL_5MC6_074 | 1/2/1636:1638, 1/2/1764:1767 | No text annotation | geometric IL_5J7L_058 NA | |
| IL_5MC6_075 | 1/2/1638:1641, 1/2/1760:1764 | No text annotation | homologous IL_4V88_464 NA | |
| IL_5MC6_076 | 1/2/1642:1644, 1/2/1757:1759 | Isolated non-canonical cWW pair | geometric IL_4V88_465 NA | |
| IL_5MC6_077 | 1/2/1644:1647, 1/2/1753:1757 | No text annotation | homologous IL_8CRE_469 IL_73099.1 | |
| IL_5MC6_078 | 1/2/1650:1652, 1/2/1748:1750 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_5MC6_079 | 1/2/1653:1656, 1/2/1744:1747 | Double sheared | homologous IL_4V88_468 NA | |
| IL_5MC6_080 | 1/2/1656:1658, 1/2/1743:1744 | Single bulged U | geometric IL_4V88_469 NA | |
| IL_5MC6_081 | 1/2/1665:1667, 1/2/1734:1736 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_5MC6_082 | 1/2/1669:1672, 1/2/1729:1732 | Double sheared | homologous IL_4V88_471 NA | |
| IL_5MC6_083 | 1/2/1672:1674, 1/2/1727:1729 | Isolated non-canonical cWW pair | geometric IL_3DIL_006 IL_01003.3 | |
| IL_5MC6_084 | 1/2/1675:1678, 1/2/1723:1726 | Tandem non-canonical cWW pairs | homologous IL_4V88_473 NA | |
| IL_5MC6_085 | 1/2/1678:1682, 1/2/1719:1723 | Triple sheared | geometric IL_4V88_474 NA | |
| IL_5MC6_086 | 1/BQ/7:8, 1/BS/150:152 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_5MC6_087 | 1/BQ/13:15, 1/BS/144:145 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_5MC6_243 | 1/BQ/27:28, 1/BQ/56:58 | Single stack bend | homologous IL_8P9A_233 IL_15011.2 | |
| IL_5MC6_088 | 1/BQ/31:38, 1/BQ/45:53 | tSH-tHW-tHH-tHS | geometric IL_5TBW_005 NA | |
| IL_5MC6_089 | 1/BQ/82:89, 1/BQ/97:103 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_006 NA | |
| IL_5MC6_090 | 1/BQ/123:124, 1/BQ/144:149 | No text annotation | geometric IL_5TBW_007 NA | |
| IL_5MC6_091 | 1/BQ/125:127, 1/BQ/141:143 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_5MC6_254 | 1/BQ/163:165, 1/BQ/257:258 | Single stack bend | homologous IL_8P9A_238 IL_15011.2 | |
| IL_5MC6_244 | 1/BQ/169:170, 1/BQ/248:253 | No text annotation | geometric IL_5TBW_010 NA | |
| IL_5MC6_095 | 1/BQ/189:191, 1/BQ/204:205 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_5MC6_096 | 1/BQ/337:339, 1/BS/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_5MC6_097 | 1/BQ/376:379, 1/BQ/390:403 | No text annotation | homologous IL_8C3A_015 NA | |
| IL_5MC6_098 | 1/BQ/404:410, 1/BS/13:19 | Triple sheared with non-canonical cWW | geometric IL_5TBW_015 NA | |
| IL_5MC6_099 | 1/BQ/429:432, 1/BQ/627:630 | Tandem non-canonical cWW pairs | geometric IL_4K27_001 IL_15225.2 | |
| IL_5MC6_101 | 1/BQ/512:513, 1/BQ/577:579 | Single bulged A | homologous IL_5TBW_018 NA | |
| IL_5MC6_102 | 1/BQ/517:525, 1/BQ/567:573 | No text annotation | homologous IL_5TBW_019 NA | |
| IL_5MC6_245 | 1/BQ/531:538, 1/BQ/553:561 | No text annotation | homologous IL_8P9A_248 IL_25001.1 | |
| IL_5MC6_104 | 1/BQ/668:670, 1/BQ/792:794 | Isolated non-canonical cWW pair | homologous IL_5TBW_021 NA | |
| IL_5MC6_105 | 1/BQ/680:684, 1/BQ/696:700 | No text annotation | homologous IL_5TBW_022 NA | |
| IL_5MC6_246 | 1/BQ/725:728, 1/BQ/741:745 | No text annotation | homologous IL_8C3A_025 NA | |
| IL_5MC6_107 | 1/BQ/752:753, 1/BQ/779:781 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_5MC6_108 | 1/BQ/755:756, 1/BQ/775:777 | Single bulged U | homologous IL_5TBW_025 NA | |
| IL_5MC6_109 | 1/BQ/758:763, 1/BQ/768:773 | No text annotation | geometric IL_5TBW_026 NA | |
| IL_5MC6_110 | 1/BQ/803:805, 1/BQ/938:940 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_5MC6_111 | 1/BQ/805:809, 1/BQ/931:938 | tHW-tHW cross-strand stack | geometric IL_5TBW_028 NA | |
| IL_5MC6_112 | 1/BQ/833:834, 1/BQ/859:861 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_5MC6_113 | 1/BQ/834:838, 1/BQ/855:859 | Triple sheared | geometric IL_5J7L_263 NA | |
| IL_5MC6_114 | 1/BQ/869:872, 1/BQ/888:890 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_5MC6_115 | 1/BQ/873:875, 1/BQ/886:887 | Single bulged U | homologous IL_5TBW_032 NA | |
| IL_5MC6_116 | 1/BQ/907:909, 1/BQ/919:923 | Multiple bulged bases | geometric IL_5TBW_033 NA | |
| IL_5MC6_117 | 1/BQ/954:956, 1/BQ/965:967 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_5MC6_118 | 1/BQ/969:970, 1/BQ/1111:1113 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_5MC6_119 | 1/BQ/977:981, 1/BQ/1102:1104 | No text annotation | homologous IL_8P9A_264 IL_25463.2 | |
| IL_5MC6_120 | 1/BQ/983:985, 1/BQ/1099:1100 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_5MC6_121 | 1/BQ/991:997, 1/BQ/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5TBW_038 NA | |
| IL_5MC6_122 | 1/BQ/997:998, 1/BQ/1050:1052 | Minor groove platform | geometric IL_5TBW_039 NA | |
| IL_5MC6_123 | 1/BQ/999:1004, 1/BQ/1046:1049 | C-loop | homologous IL_5TBW_040 NA | |
| IL_5MC6_247 | 1/BQ/1006:1009, 1/BQ/1041:1044 | Tandem non-canonical cWW pairs | homologous IL_8P9A_269 IL_71194.2 | |
| IL_5MC6_125 | 1/BQ/1009:1011, 1/BQ/1039:1041 | Isolated non-canonical cWW pair | homologous IL_8C3A_045 NA | |
| IL_5MC6_126 | 1/BQ/1013:1018, 1/BQ/1034:1037 | Other IL | homologous IL_5TBW_043 NA | |
| IL_5MC6_127 | 1/BQ/1069:1071, 1/BQ/1087:1089 | Isolated non-canonical cWW pair | homologous IL_8C3A_047 NA | |
| IL_5MC6_128 | 1/BQ/1074:1076, 1/BQ/1083:1084 | Single bulged A | geometric IL_8VTW_047 NA | |
| IL_5MC6_129 | 1/BQ/1120:1122, 1/BQ/1136:1138 | Isolated non-canonical cWW pair | homologous IL_5TBW_046 NA | |
| IL_5MC6_130 | 1/BQ/1167:1171, 1/BQ/1328:1332 | UAA/GAN | homologous IL_5TBW_048 NA | |
| IL_5MC6_131 | 1/BQ/1173:1180, 1/BQ/1325:1326 | SSU/LSU pseudoknot | geometric IL_5TBW_049 NA | |
| IL_5MC6_132 | 1/BQ/1180:1182, 1/BQ/1324:1325 | Single bulged U | homologous IL_5TBW_050 NA | |
| IL_5MC6_133 | 1/BQ/1187:1194, 1/BQ/1314:1319 | No text annotation | ||
| IL_5MC6_134 | 1/BQ/1194:1205, 1/BQ/1299:1314 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_5MC6_135 | 1/BQ/1207:1209, 1/BQ/1296:1297 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_5MC6_136 | 1/BQ/1218:1226, 1/BQ/1283:1287 | Kink-turn | homologous IL_5TBW_054 NA | |
| IL_5MC6_137 | 1/BQ/1376:1378, 1/BQ/1428:1431 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_5MC6_138 | 1/BQ/1385:1387, 1/BQ/1420:1421 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_5MC6_139 | 1/BQ/1388:1395, 1/BQ/1415:1419 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_5MC6_140 | 1/BQ/1398:1400, 1/BQ/1411:1412 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_5MC6_141 | 1/BQ/1444:1450, 1/BQ/2354:2359 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_5MC6_249 | 1/BQ/1501:1505, 1/BQ/1513:1515 | C-loop | homologous IL_8P9A_290 IL_63596.12 | |
| IL_5MC6_143 | 1/BQ/1532:1536, 1/BQ/1585:1590 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_5MC6_146 | 1/BQ/1618:1621, 1/BQ/1824:1826 | Other IL | homologous IL_5TBW_064 NA | |
| IL_5MC6_147 | 1/BQ/1623:1624, 1/BQ/1819:1822 | No text annotation | homologous IL_8C3A_483 NA | |
| IL_5MC6_148 | 1/BQ/1627:1631, 1/BQ/1811:1816 | No text annotation | geometric IL_5TBW_066 NA | |
| IL_5MC6_149 | 1/BQ/1645:1649, 1/BQ/1806:1810 | Triple sheared | geometric IL_5TBW_067 NA | |
| IL_5MC6_150 | 1/BQ/1661:1663, 1/BQ/1786:1788 | Isolated non-canonical cWW pair | homologous IL_8C3A_074 NA | |
| IL_5MC6_151 | 1/BQ/1669:1670, 1/BQ/1778:1780 | Single bulged C | homologous IL_5TBW_069 NA | |
| IL_5MC6_152 | 1/BQ/1670:1671, 1/BQ/1776:1778 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_5MC6_153 | 1/BQ/1694:1698, 1/BQ/1747:1752 | No text annotation | homologous IL_8C3A_077 NA | |
| IL_5MC6_154 | 1/BQ/1702:1707, 1/BQ/1737:1743 | No text annotation | homologous IL_5TBW_072 NA | |
| IL_5MC6_155 | 1/BQ/1711:1717, 1/BQ/1727:1733 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_5MC6_156 | 1/BQ/1883:1889, 1/BQ/2346:2349 | No text annotation | homologous IL_5TBW_074 NA | |
| IL_5MC6_157 | 1/BQ/1895:1897, 1/BQ/2338:2340 | Isolated tWW turn | homologous IL_5TBW_075 NA | |
| IL_5MC6_158 | 1/BQ/1898:1901, 1/BQ/2336:2337 | Major groove platform; stack outside cWW | homologous IL_8C3A_082 NA | |
| IL_5MC6_250 | 1/BQ/1898:1906, 1/BQ/2333:2337 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_5MC6_159 | 1/BQ/1901:1906, 1/BQ/2333:2336 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_5MC6_160 | 1/BQ/1918:1923, 1/BQ/1928:1934 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_20700.1 | |
| IL_5MC6_161 | 1/BQ/1940:1942, 1/BQ/2106:2108 | Isolated non-canonical cWW pair | homologous IL_5TBW_079 NA | |
| IL_5MC6_162 | 1/BQ/1947:1948, 1/BQ/2098:2101 | No text annotation | homologous IL_5TBW_080 NA | |
| IL_5MC6_163 | 1/BQ/2128:2129, 1/BQ/2323:2325 | Single bulged A | homologous IL_5TBW_082 NA | |
| IL_5MC6_164 | 1/BQ/2156:2161, 1/BQ/2173:2180 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_5MC6_165 | 1/BQ/2196:2199, 1/BQ/2245:2246 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_5MC6_166 | 1/BQ/2200:2201, 1/BQ/2241:2244 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_5MC6_167 | 1/BQ/2204:2206, 1/BQ/2237:2238 | Single bulged U | geometric IL_5TBW_086 NA | |
| IL_5MC6_168 | 1/BQ/2206:2210, 1/BQ/2235:2237 | Major groove platform with extra pair | homologous IL_5TBW_087 NA | |
| IL_5MC6_169 | 1/BQ/2211:2217, 1/BQ/2228:2234 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_5MC6_170 | 1/BQ/2276:2277, 1/BQ/2307:2310 | No text annotation | homologous IL_8C3A_094 NA | |
| IL_5MC6_171 | 1/BQ/2277:2288, 1/BQ/2304:2307 | No text annotation | geometric IL_5TBW_090 NA | |
| IL_5MC6_172 | 1/BQ/2391:2394, 1/BQ/2986:2988 | Major groove platform with extra pair | homologous IL_5TBW_091 NA | |
| IL_5MC6_173 | 1/BQ/2396:2398, 1/BQ/2981:2984 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_5MC6_174 | 1/BQ/2409:2411, 1/BQ/2811:2812 | Single bulged U | homologous IL_5TBW_093 NA | |
| IL_5MC6_175 | 1/BQ/2412:2413, 1/BQ/2807:2810 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_5MC6_176 | 1/BQ/2423:2425, 1/BQ/2604:2607 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_5MC6_178 | 1/BQ/2520:2526, 1/BQ/2584:2587 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_5MC6_179 | 1/BQ/2614:2615, 1/BQ/2625:2627 | Single bulged A | homologous IL_5TBW_098 NA | |
| IL_5MC6_180 | 1/BQ/2666:2668, 1/BQ/2686:2690 | Isolated tHS basepair with bulges | geometric IL_5TBW_099 NA | |
| IL_5MC6_181 | 1/BQ/2718:2721, 1/BQ/2735:2738 | Tandem non-canonical cWW pairs | homologous IL_5TBW_100 NA | |
| IL_5MC6_182 | 1/BQ/2770:2773, 1/BQ/2787:2788 | Single stack bend | homologous IL_8C3A_110 NA | |
| IL_5MC6_183 | 1/BQ/2823:2824, 1/BQ/2865:2867 | Major groove platform | geometric IL_7RQB_092 NA | |
| IL_5MC6_184 | 1/BQ/2824:2826, 1/BQ/2863:2865 | Isolated non-canonical cWW pair | geometric IL_5TBW_103 NA | |
| IL_5MC6_185 | 1/BQ/2826:2830, 1/BQ/2858:2863 | No text annotation | ||
| IL_5MC6_186 | 1/BQ/2835:2839, 1/BQ/2849:2853 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_5MC6_187 | 1/BQ/2876:2877, 1/BQ/2949:2951 | Major groove platform | homologous IL_8C3A_115 NA | |
| IL_5MC6_188 | 1/BQ/2879:2881, 1/BQ/2943:2947 | Isolated non-canonical cWW with bulges | geometric IL_5TBW_108 NA | |
| IL_5MC6_189 | 1/BQ/2881:2882, 1/BQ/2940:2943 | Multiple bulged bases | homologous IL_5TBW_109 NA | |
| IL_5MC6_190 | 1/BQ/2889:2891, 1/BQ/2912:2914 | Isolated non-canonical cWW pair | geometric IL_5TBW_110 NA | |
| IL_5MC6_191 | 1/BQ/2891:2892, 1/BQ/2909:2912 | Major groove platform with intercalation | geometric IL_5TBW_111 NA | |
| IL_5MC6_192 | 1/BQ/2918:2920, 1/BQ/2926:2928 | Isolated non-canonical cWW pair | geometric IL_5TBW_112 NA | |
| IL_5MC6_193 | 1/BQ/2960:2961, 1/BQ/2970:2972 | Single bulged A | geometric IL_7RQB_101 NA | |
| IL_5MC6_194 | 1/BQ/3004:3007, 1/BQ/3139:3144 | Double sheared | homologous IL_5TBW_114 NA | |
| IL_5MC6_195 | 1/BQ/3012:3014, 1/BQ/3040:3042 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_5MC6_196 | 1/BQ/3018:3025, 1/BQ/3030:3036 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_5MC6_197 | 1/BQ/3046:3051, 1/BQ/3091:3095 | No text annotation | ||
| IL_5MC6_198 | 1/BQ/3054:3059, 1/BQ/3084:3088 | UAA/GAN related | homologous IL_5TBW_118 NA | |
| IL_5MC6_199 | 1/BQ/3063:3064, 1/BQ/3077:3080 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
| IL_5MC6_200 | 1/BQ/3103:3107, 1/BQ/3127:3131 | UAA/GAN | homologous IL_8C3A_129 NA | |
| IL_5MC6_201 | 1/BQ/3164:3166, 1/BQ/3284:3286 | Isolated non-canonical cWW pair | homologous IL_8C3A_130 NA | |
| IL_5MC6_202 | 1/BQ/3168:3170, 1/BQ/3280:3282 | Isolated non-canonical cWW pair | homologous IL_5TBW_122 NA | |
| IL_5MC6_203 | 1/BQ/3177:3179, 1/BQ/3210:3211 | Single bulged A | geometric IL_5TBW_123 NA | |
| IL_5MC6_204 | 1/BQ/3179:3188, 1/BQ/3204:3210 | No text annotation | homologous IL_5TBW_124 NA | |
| IL_5MC6_205 | 1/BQ/3193:3194, 1/BQ/3197:3199 | Single bulged U | geometric IL_5TBW_125 NA | |
| IL_5MC6_209 | 1/BQ/3300:3303, 1/BQ/3311:3314 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
| IL_5MC6_210 | 1/BQ/3318:3320, 1/BQ/3387:3388 | Single bulged U | geometric IL_5J7L_298 NA | |
| IL_5MC6_211 | 1/BQ/3324:3325, 1/BQ/3381:3383 | Single bulged U | homologous IL_5TBW_131 NA | |
| IL_5MC6_212 | 1/BQ/3328:3330, 1/BQ/3373:3378 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_5MC6_213 | 1/BQ/3332:3337, 1/BQ/3367:3371 | No text annotation | homologous IL_8C3A_139 NA | |
| IL_5MC6_214 | 1/BQ/3340:3342, 1/BQ/3363:3364 | Single bulged U | geometric IL_3WBM_001 IL_97561.3 | |
| IL_5MC6_215 | 1/BQ/3342:3345, 1/BQ/3360:3363 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_5MC6_217 | 1/BR/15:16, 1/BR/63:65 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_5MC6_218 | 1/BR/21:27, 1/BR/53:58 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_5MC6_219 | 1/BR/28:29, 1/BR/49:52 | Minor groove platform | geometric IL_5TBW_374 NA | |
| IL_5MC6_220 | 1/BR/29:30, 1/BR/47:49 | Single stack bend | homologous IL_5TBW_375 NA | |
| IL_5MC6_221 | 1/BR/32:36, 1/BR/41:45 | Symmetric double minor groove platform | homologous IL_5TBW_376 NA | |
| IL_5MC6_222 | 1/BR/72:80, 1/BR/100:106 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_5MC6_223 | 1/BR/84:87, 1/BR/94:96 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_5MC6_224 | 1/BS/44:64, 1/BS/96:100 | No text annotation | geometric IL_5TBW_144 NA | |
| IL_5MC6_225 | 1/BS/64:66, 1/BS/93:96 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_5MC6_226 | 1/BS/68:69, 1/BS/89:91 | Single bulged U | geometric IL_5TBW_146 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5MC6_227 | No text annotation | ||
| IL_5MC6_010 | tWH-tWH-tHW-tHW | ||
| IL_5MC6_013 | Isolated non-canonical cWW pair | ||
| IL_5MC6_230 | No text annotation | ||
| IL_5MC6_014 | Isolated non-canonical cWW pair | ||
| IL_5MC6_231 | No text annotation | ||
| IL_5MC6_016 | No text annotation | ||
| IL_5MC6_017 | Single bulged U | ||
| IL_5MC6_023 | Single bulged U | ||
| IL_5MC6_232 | Single bulged A | ||
| IL_5MC6_026 | Isolated cWS basepair | ||
| IL_5MC6_027 | Minor groove platform | ||
| IL_5MC6_233 | Double sheared | ||
| IL_5MC6_028 | Minor groove platform | ||
| IL_5MC6_034 | No text annotation | ||
| IL_5MC6_035 | Isolated non-canonical cWW pair | ||
| IL_5MC6_235 | No text annotation | ||
| IL_5MC6_036 | No text annotation | ||
| IL_5MC6_040 | No text annotation | ||
| IL_5MC6_236 | No text annotation | ||
| IL_5MC6_237 | No text annotation | ||
| IL_5MC6_238 | No text annotation | ||
| IL_5MC6_061 | No text annotation | ||
| IL_5MC6_070 | Isolated non-canonical cWW pair | ||
| IL_5MC6_240 | No text annotation | ||
| IL_5MC6_241 | No text annotation | ||
| IL_5MC6_242 | Tandem non-canonical cWW pairs | ||
| IL_5MC6_092 | Other IL | ||
| IL_5MC6_093 | No text annotation | ||
| IL_5MC6_094 | Single stack bend | ||
| IL_5MC6_100 | Kink-turn related | ||
| IL_5MC6_103 | No text annotation | ||
| IL_5MC6_106 | Triple sheared related | ||
| IL_5MC6_124 | No text annotation | ||
| IL_5MC6_248 | No text annotation | ||
| IL_5MC6_142 | No text annotation | ||
| IL_5MC6_144 | No text annotation | ||
| IL_5MC6_255 | Single stack bend | ||
| IL_5MC6_145 | Single stack bend | ||
| IL_5MC6_177 | Single stack bend | ||
| IL_5MC6_206 | No text annotation | ||
| IL_5MC6_207 | Isolated non-canonical cWW pair | ||
| IL_5MC6_208 | Tandem non-canonical cWW pairs | ||
| IL_5MC6_216 | Multiple bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5MC6_001 | 1/2/41:42, 1/2/433:439, 1/2/464:466 | No text annotation | homologous J3_8C3A_082 NA | |
| J3_5MC6_030 | 1/2/213:228, 1/2/237:243, 1/2/250:252 | No text annotation | ||
| J3_5MC6_002 | 1/2/633:635, 1/2/861:865, 1/2/965:966 | No text annotation | geometric J3_4V88_080 NA | |
| J3_5MC6_031 | 1/2/633:635, 1/2/861:866, 1/2/962:966 | No text annotation | homologous J3_8P9A_072 J3_17385.5 | |
| J3_5MC6_032 | 1/2/760:763, 1/2/773:775, 1/2/785:790 | No text annotation | homologous J3_8P9A_073 J3_97642.2 | |
| J3_5MC6_003 | 1/2/881:884, 1/2/928:936, 1/2/943:947 | No text annotation | homologous J3_4V88_033 NA | |
| J3_5MC6_004 | 1/2/1037:1039, 1/2/1079:1083, 1/2/1090:1094 | No text annotation | homologous J3_4V88_034 NA | |
| J3_5MC6_005 | 1/2/1161:1164, 1/2/1581:1587, 1/2/1609:1616 | No text annotation | homologous J3_4V88_035 NA | |
| J3_5MC6_006 | 1/2/1168:1173, 1/2/1466:1470, 1/2/1574:1577 | No text annotation | ||
| J3_5MC6_007 | 1/2/1180:1187, 1/2/1198:1209, 1/2/1454:1458 | No text annotation | homologous J3_8P9A_078 J3_88451.1 | |
| J3_5MC6_008 | 1/2/1215:1220, 1/2/1263:1267, 1/2/1442:1448 | No text annotation | homologous J3_4V88_038 NA | |
| J3_5MC6_009 | 1/2/1283:1288, 1/2/1327:1332, 1/2/1419:1424 | No text annotation | homologous J3_4V88_039 NA | |
| J3_5MC6_010 | 1/2/1293:1294, 1/2/1303:1306, 1/2/1318:1322 | No text annotation | homologous J3_8P9A_081 J3_76043.4 | |
| J3_5MC6_011 | 1/2/1336:1338, 1/2/1386:1389, 1/2/1412:1415 | No text annotation | homologous J3_8C3A_043 NA | |
| J3_5MC6_033 | 1/2/1336:1338, 1/2/1386:1391, 1/2/1407:1415 | No text annotation | homologous J3_8C3A_086 NA | |
| J3_5MC6_012 | 1/2/1470:1474, 1/2/1533:1545, 1/2/1566:1574 | No text annotation | ||
| J3_5MC6_013 | 1/BQ/113:123, 1/BQ/149:158, 1/BQ/263:267 | No text annotation | homologous J3_8C3A_001 NA | |
| J3_5MC6_035 | 1/BQ/113:124, 1/BQ/144:158, 1/BQ/263:267 | No text annotation | ||
| J3_5MC6_036 | 1/BQ/340:356, 1/BQ/363:368, 1/BS/21:24 | No text annotation | homologous J3_8C3A_047 NA | |
| J3_5MC6_014 | 1/BQ/369:376, 1/BQ/403:404, 1/BS/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_5MC6_037 | 1/BQ/369:379, 1/BQ/390:404, 1/BS/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_5MC6_015 | 1/BQ/502:503, 1/BQ/588:597, 1/BQ/606:611 | No text annotation | homologous J3_5TBW_003 NA | |
| J3_5MC6_016 | 1/BQ/814:820, 1/BQ/905:907, 1/BQ/923:926 | No text annotation | homologous J3_5TBW_004 NA | |
| J3_5MC6_017 | 1/BQ/828:831, 1/BQ/863:867, 1/BQ/892:897 | No text annotation | homologous J3_5TBW_005 NA | |
| J3_5MC6_018 | 1/BQ/986:987, 1/BQ/1062:1066, 1/BQ/1092:1098 | No text annotation | homologous J3_5TBW_006 NA | |
| J3_5MC6_020 | 1/BQ/1479:1485, 1/BQ/1857:1859, 1/BQ/1871:1874 | No text annotation | homologous J3_5TBW_008 NA | |
| J3_5MC6_021 | 1/BQ/1488:1491, 1/BQ/1837:1843, 1/BQ/1852:1854 | No text annotation | homologous J3_5TBW_009 NA | |
| J3_5MC6_022 | 1/BQ/1526:1531, 1/BQ/1591:1595, 1/BQ/1612:1613 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_5MC6_039 | 1/BQ/1537:1542, 1/BQ/1551:1560, 1/BQ/1579:1584 | No text annotation | ||
| J3_5MC6_023 | 1/BQ/1631:1632, 1/BQ/1641:1645, 1/BQ/1810:1811 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_5MC6_040 | 1/BQ/1654:1658, 1/BQ/1791:1792, 1/BQ/1796:1801 | No text annotation | homologous J3_8P9A_058 J3_08594.1 | |
| J3_5MC6_024 | 1/BQ/2432:2435, 1/BQ/2512:2517, 1/BQ/2590:2597 | No text annotation | homologous J3_5TBW_012 NA | |
| J3_5MC6_025 | 1/BQ/2529:2532, 1/BQ/2547:2563, 1/BQ/2578:2581 | No text annotation | homologous J3_8C3A_009 NA | |
| J3_5MC6_041 | 1/BQ/2651:2653, 1/BQ/2754:2765, 1/BQ/2793:2798 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_5MC6_026 | 1/BQ/2664:2666, 1/BQ/2690:2692, 1/BQ/2701:2706 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_5MC6_027 | 1/BQ/2886:2889, 1/BQ/2914:2916, 1/BQ/2930:2936 | No text annotation | homologous J3_5TBW_014 NA | |
| J3_5MC6_042 | 1/BQ/3171:3176, 1/BQ/3212:3220, 1/BQ/3265:3279 | No text annotation | homologous J3_8P9A_064 J3_03190.1 | |
| J3_5MC6_028 | 1/BQ/3298:3300, 1/BQ/3314:3318, 1/BQ/3388:3390 | No text annotation | homologous J3_5TBW_015 NA | |
| J3_5MC6_029 | 1/BR/9:14, 1/BR/66:67, 1/BR/111:112 | No text annotation | homologous J3_5TBW_045 NA | |
| J3_5MC6_043 | 1/BS/44:45, 1/BS/58:64, 1/BS/96:100 | No text annotation | homologous J3_8P4V_024 NA | |
| J4_5MC6_014 | 1/2/99:107, 1/2/307:309, 1/2/357:361, 1/2/383:384 | No text annotation | homologous J4_8CRE_021 J4_15241.2 | |
| J4_5MC6_002 | 1/2/622:624, 1/2/975:980, 1/2/1021:1032, 1/2/1103:1104 | No text annotation | homologous J4_8P9A_022 J4_14595.1 | |
| J4_5MC6_015 | 1/BQ/112:113, 1/BQ/267:272, 1/BQ/293:299, 1/BQ/316:319 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_5MC6_004 | 1/BQ/185:189, 1/BQ/205:208, 1/BQ/212:214, 1/BQ/226:231 | No text annotation | homologous J4_8P9A_013 J4_43318.1 | |
| J4_5MC6_005 | 1/BQ/1451:1457, 1/BQ/1475:1476, 1/BQ/1877:1880, 1/BQ/2352:2353 | No text annotation | homologous J4_8P9A_014 J4_34212.1 | |
| J4_5MC6_006 | 1/BQ/1492:1496, 1/BQ/1520:1525, 1/BQ/1614:1615, 1/BQ/1829:1836 | No text annotation | homologous J4_8C3A_004 NA | |
| J4_5MC6_007 | 1/BQ/1674:1675, 1/BQ/1693:1694, 1/BQ/1752:1753, 1/BQ/1772:1773 | No text annotation | homologous J4_8P9A_016 J4_75575.1 | |
| J4_5MC6_008 | 1/BQ/2130:2134, 1/BQ/2146:2150, 1/BQ/2186:2190, 1/BQ/2317:2322 | No text annotation | homologous J4_8P9A_017 J4_78485.1 | |
| J4_5MC6_009 | 1/BQ/2192:2194, 1/BQ/2248:2249, 1/BQ/2267:2276, 1/BQ/2310:2315 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_5MC6_016 | 1/BQ/2654:2658, 1/BQ/2712:2716, 1/BQ/2740:2742, 1/BQ/2751:2753 | No text annotation | homologous J4_8CRE_008 NA | |
| J4_5MC6_011 | 1/BQ/3010:3012, 1/BQ/3042:3043, 1/BQ/3098:3100, 1/BQ/3134:3136 | No text annotation | homologous J4_8P9A_020 J4_37757.1 | |
| J4_5MC6_017 | 1/m/6:10, 1/m/25:27, 1/m/43:49, 1/m/65:67 | tRNA junction | homologous J4_8VU0_001 J4_95067.1 | |
| J4_5MC6_013 | 1/n/7:10, 1/n/25:27, 1/n/43:50, 1/n/64:66 | No text annotation | ||
| J5_5MC6_001 | 1/2/31:35, 1/2/473:479, 1/2/509:516, 1/2/536:546, 1/2/592:595 | No text annotation | ||
| J5_5MC6_002 | 1/2/54:57, 1/2/90:97, 1/2/386:388, 1/2/409:413, 1/2/420:426 | No text annotation | ||
| J5_5MC6_011 | 1/2/124:143, 1/2/172:182, 1/2/203:204, 1/2/263:265, 1/2/289:293 | No text annotation | ||
| J5_5MC6_004 | 1/2/636:641, 1/2/693:698, 1/2/740:744, 1/2/807:817, 1/2/854:860 | No text annotation | ||
| J5_5MC6_005 | 1/BQ/20:22, 1/BS/35:42, 1/BS/102:107, 1/BS/115:116, 1/BS/137:139 | No text annotation | homologous J5_8C3A_001 NA | |
| J5_5MC6_006 | 1/BQ/658:663, 1/BQ/799:802, 1/BQ/941:944, 1/BQ/1375:1376, 1/BQ/1431:1437 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_5MC6_007 | 1/BQ/675:678, 1/BQ/702:706, 1/BQ/713:721, 1/BQ/749:751, 1/BQ/782:787 | No text annotation | homologous J5_8P9A_012 J5_56629.1 | |
| J5_5MC6_008 | 1/BQ/1906:1914, 1/BQ/1938:1939, 1/BQ/2109:2110, 1/BQ/2114:2122, 1/BQ/2331:2333 | No text annotation | homologous J5_8P9A_013 J5_99177.1 | |
| J5_5MC6_009 | 1/BQ/2399:2406, 1/BQ/2815:2823, 1/BQ/2867:2876, 1/BQ/2951:2957, 1/BQ/2975:2980 | No text annotation | ||
| J5_5MC6_010 | 1/BQ/2416:2419, 1/BQ/2611:2614, 1/BQ/2627:2628, 1/BQ/2650:2651, 1/BQ/2798:2804 | No text annotation | ||
| J6_5MC6_001 | 1/BQ/22:27, 1/BQ/58:68, 1/BQ/75:79, 1/BQ/106:110, 1/BQ/321:331, 1/BS/32:35 | No text annotation | ||
| J6_5MC6_002 | 1/BQ/2416:2419, 1/BQ/2611:2614, 1/BQ/2627:2628, 1/BQ/2650:2653, 1/BQ/2754:2765, 1/BQ/2793:2804 | No text annotation | ||
| J7_5MC6_001 | 1/BQ/949:954, 1/BQ/967:968, 1/BQ/1114:1117, 1/BQ/1141:1146, 1/BQ/1157:1161, 1/BQ/1338:1339, 1/BQ/1365:1370 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5MC6_034 | No text annotation | ||
| J3_5MC6_038 | No text annotation | ||
| J3_5MC6_019 | No text annotation | ||
| J4_5MC6_001 | No text annotation | ||
| J4_5MC6_003 | No text annotation | ||
| J4_5MC6_010 | No text annotation | ||
| J4_5MC6_012 | No text annotation | ||
| J5_5MC6_003 | No text annotation |
Coloring options: