HL_5MC6_014

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MC6_014 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.1339

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5MC6|1|2|A|520
5MC6|1|2|A|521
5MC6|1|2|U|522
5MC6|1|2|G|523
5MC6|1|2|U|524
5MC6|1|2|A|525
5MC6|1|2|A|526
5MC6|1|2|A|527
5MC6|1|2|U|528
5MC6|1|2|A|529
5MC6|1|2|C|530
5MC6|1|2|C|531
5MC6|1|2|U|532

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain W

40S ribosomal protein S9-A

Chain d

40S ribosomal protein S24-A