HL_5MC6_017

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCUAACCUUGAGUCCUUGUGGCUCUUGGCGAACC

Length

34 nucleotides

Bulged bases

5MC6|1|2|C|709, 5MC6|1|2|U|711, 5MC6|1|2|C|717, 5MC6|1|2|U|718, 5MC6|1|2|U|719, 5MC6|1|2|G|720, 5MC6|1|2|U|721, 5MC6|1|2|G|722, 5MC6|1|2|U|725, 5MC6|1|2|C|726, 5MC6|1|2|A|733

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MC6|1|2|G|703
5MC6|1|2|C|704
5MC6|1|2|U|705
5MC6|1|2|A|706
5MC6|1|2|A|707
5MC6|1|2|C|708
5MC6|1|2|C|709
5MC6|1|2|U|710
5MC6|1|2|U|711
5MC6|1|2|G|712
5MC6|1|2|A|713
5MC6|1|2|G|714
5MC6|1|2|U|715
5MC6|1|2|C|716
5MC6|1|2|C|717
5MC6|1|2|U|718
5MC6|1|2|U|719
5MC6|1|2|G|720
5MC6|1|2|U|721
5MC6|1|2|G|722
5MC6|1|2|G|723
5MC6|1|2|C|724
5MC6|1|2|U|725
5MC6|1|2|C|726
5MC6|1|2|U|727
5MC6|1|2|U|728
5MC6|1|2|G|729
5MC6|1|2|G|730
5MC6|1|2|C|731
5MC6|1|2|G|732
5MC6|1|2|A|733
5MC6|1|2|A|734
5MC6|1|2|C|735
5MC6|1|2|C|736

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain T

40S ribosomal protein S6-A