HL_5MC6_018

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

5MC6|1|2|G|765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MC6_018 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.1204

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

5MC6|1|2|U|764
5MC6|1|2|G|765
5MC6|1|2|U|766
5MC6|1|2|U|767
5MC6|1|2|C|768
5MC6|1|2|A|769
5MC6|1|2|A|770
5MC6|1|2|A|771
5MC6|1|2|G|772

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain W

40S ribosomal protein S9-A

Chain d

40S ribosomal protein S24-A