HL_5MC6_019
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGUAUUG
- Length
- 7 nucleotides
- Bulged bases
- 5MC6|1|2|U|779, 5MC6|1|2|U|781, 5MC6|1|2|U|782
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MC6_019 not in the Motif Atlas
- Geometric match to HL_4V9F_003
- Geometric discrepancy: 0.3832
- The information below is about HL_4V9F_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.7
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 22
Unit IDs
5MC6|1|2|C|777
5MC6|1|2|G|778
5MC6|1|2|U|779
5MC6|1|2|A|780
5MC6|1|2|U|781
5MC6|1|2|U|782
5MC6|1|2|G|783
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain S
- 40S ribosomal protein S4-A
- Chain d
- 40S ribosomal protein S24-A
Coloring options: