HL_5MC6_032

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

5MC6|1|2|U|1398

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MC6_032 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.4152

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

5MC6|1|2|U|1396
5MC6|1|2|U|1397
5MC6|1|2|U|1398
5MC6|1|2|C|1399
5MC6|1|2|A|1400
5MC6|1|2|A|1401
5MC6|1|2|G|1402

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S17-B

Chain L

40S ribosomal protein S28-B