HL_5MC6_042

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

5MC6|1|BQ|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MC6_042 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.1383

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

5MC6|1|BQ|U|194
5MC6|1|BQ|U|195
5MC6|1|BQ|G|196
5MC6|1|BQ|G|197
5MC6|1|BQ|A|198
5MC6|1|BQ|A|199
5MC6|1|BQ|C|200
5MC6|1|BQ|A|201

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AK

60S ribosomal protein L26-A

Chain BG

60S ribosomal protein L32