HL_5MC6_060

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAAUG

Length

7 nucleotides

Bulged bases

5MC6|1|BQ|U|1028

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MC6_060 not in the Motif Atlas

Homologous match to HL_5TBW_023

Geometric discrepancy: 0.4563

The information below is about HL_5TBW_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5MC6|1|BQ|C|1023
5MC6|1|BQ|G|1024
5MC6|1|BQ|A|1025
5MC6|1|BQ|A|1026
5MC6|1|BQ|A|1027
5MC6|1|BQ|U|1028
5MC6|1|BQ|G|1029

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AG

60S ribosomal protein L11-A

Chain E

40S ribosomal protein S15

Chain H

40S ribosomal protein S18-A