HL_5MC6_064

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUGGCCAUGGAAGUCGGAAUCC

Length

23 nucleotides

Bulged bases

5MC6|1|BQ|G|1236, 5MC6|1|BQ|U|1241, 5MC6|1|BQ|A|1245, 5MC6|1|BQ|G|1246, 5MC6|1|BQ|C|1248, 5MC6|1|BQ|U|1253

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MC6|1|BQ|G|1233
5MC6|1|BQ|G|1234
5MC6|1|BQ|U|1235
5MC6|1|BQ|G|1236
5MC6|1|BQ|G|1237
5MC6|1|BQ|C|1238
5MC6|1|BQ|C|1239
5MC6|1|BQ|A|1240
5MC6|1|BQ|U|1241
5MC6|1|BQ|G|1242
5MC6|1|BQ|G|1243
5MC6|1|BQ|A|1244
5MC6|1|BQ|A|1245
5MC6|1|BQ|G|1246
5MC6|1|BQ|U|1247
5MC6|1|BQ|C|1248
5MC6|1|BQ|G|1249
5MC6|1|BQ|G|1250
5MC6|1|BQ|A|1251
5MC6|1|BQ|A|1252
5MC6|1|BQ|U|1253
5MC6|1|BQ|C|1254
5MC6|1|BQ|C|1255

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains