HL_5MC6_066
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UUGAUAUGAUG
- Length
- 11 nucleotides
- Bulged bases
- 5MC6|1|BQ|U|1356
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MC6_066 not in the Motif Atlas
- Geometric match to HL_4OOG_001
- Geometric discrepancy: 0.1991
- The information below is about HL_4OOG_001
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_12626.2
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 17
Unit IDs
5MC6|1|BQ|U|1347
5MC6|1|BQ|U|1348
5MC6|1|BQ|G|1349
5MC6|1|BQ|A|1350
5MC6|1|BQ|U|1351
5MC6|1|BQ|A|1352
5MC6|1|BQ|U|1353
5MC6|1|BQ|G|1354
5MC6|1|BQ|A|1355
5MC6|1|BQ|U|1356
5MC6|1|BQ|G|1357
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain BB
- 60S ribosomal protein L18-A
- Chain BE
- 60S ribosomal protein L4-A
- Chain BG
- 60S ribosomal protein L32
- Chain BM
- 60S ribosomal protein L6-A
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