HL_5MC6_071

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAUUUUAUGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MC6_071 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.3834

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

5MC6|1|BQ|G|1565
5MC6|1|BQ|A|1566
5MC6|1|BQ|U|1567
5MC6|1|BQ|U|1568
5MC6|1|BQ|U|1569
5MC6|1|BQ|U|1570
5MC6|1|BQ|A|1571
5MC6|1|BQ|U|1572
5MC6|1|BQ|G|1573
5MC6|1|BQ|C|1574

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AH

60S ribosomal protein L25

Chain BS

5.8S ribosomal RNA; 5.8S rRNA