HL_5MC6_072

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

5MC6|1|BQ|U|1606, 5MC6|1|BQ|U|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MC6_072 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.1205

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5MC6|1|BQ|G|1599
5MC6|1|BQ|U|1600
5MC6|1|BQ|U|1601
5MC6|1|BQ|A|1602
5MC6|1|BQ|A|1603
5MC6|1|BQ|G|1604
5MC6|1|BQ|A|1605
5MC6|1|BQ|U|1606
5MC6|1|BQ|U|1607
5MC6|1|BQ|C|1608

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AH

60S ribosomal protein L25

Chain BF

60S ribosomal protein L19-A

Chain BN

60S ribosomal protein L34-A