HL_5MC6_088

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

5MC6|1|BQ|A|2372, 5MC6|1|BQ|A|2373, 5MC6|1|BQ|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MC6_088 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.101

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

5MC6|1|BQ|G|2369
5MC6|1|BQ|G|2370
5MC6|1|BQ|G|2371
5MC6|1|BQ|A|2372
5MC6|1|BQ|A|2373
5MC6|1|BQ|C|2374
5MC6|1|BQ|G|2375
5MC6|1|BQ|G|2376
5MC6|1|BQ|G|2377
5MC6|1|BQ|C|2378

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain BA

60S ribosomal protein L3

Chain BG

60S ribosomal protein L32