HL_5MC6_089

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGCUACC

Length

8 nucleotides

Bulged bases

5MC6|1|BQ|C|2492

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MC6|1|BQ|G|2450
5MC6|1|BQ|G|2451
5MC6|1|BQ|G|2452
5MC6|1|BQ|C|2492
5MC6|1|BQ|U|2493
5MC6|1|BQ|A|2494
5MC6|1|BQ|C|2495
5MC6|1|BQ|C|2496

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AZ

uL1

Chain Q

40S ribosomal protein S1-A