HL_5MC6_092

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

5MC6|1|BQ|G|2618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MC6_092 not in the Motif Atlas

Homologous match to HL_5TBW_054

Geometric discrepancy: 0.171

The information below is about HL_5TBW_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

5MC6|1|BQ|C|2616
5MC6|1|BQ|U|2617
5MC6|1|BQ|G|2618
5MC6|1|BQ|G|2619
5MC6|1|BQ|G|2620
5MC6|1|BQ|G|2621
5MC6|1|BQ|C|2622
5MC6|1|BQ|G|2623
5MC6|1|BQ|G|2624

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AV

60S ribosomal protein L29

Chain BD

60S ribosomal protein L10

Chain BT

Eukaryotic translation initiation factor 5A-1

Chain n

Transfer RNA; tRNA