HL_5MC6_094

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MC6_094 not in the Motif Atlas

Homologous match to HL_5TBW_056

Geometric discrepancy: 0.2281

The information below is about HL_5TBW_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5MC6|1|BQ|A|2673
5MC6|1|BQ|A|2674
5MC6|1|BQ|C|2675
5MC6|1|BQ|A|2676
5MC6|1|BQ|G|2677
5MC6|1|BQ|A|2678
5MC6|1|BQ|A|2679
5MC6|1|BQ|A|2680
5MC6|1|BQ|U|2681

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AG

60S ribosomal protein L11-A