HL_5MC6_108

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

5MC6|1|BQ|U|3304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MC6_108 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.1673

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

5MC6|1|BQ|G|3303
5MC6|1|BQ|U|3304
5MC6|1|BQ|A|3305
5MC6|1|BQ|U|3306
5MC6|1|BQ|A|3307
5MC6|1|BQ|C|3308
5MC6|1|BQ|G|3309
5MC6|1|BQ|A|3310
5MC6|1|BQ|C|3311

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AX

60S ribosomal protein L17-A

Chain BA

60S ribosomal protein L3