HL_5MC6_116
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- ACUUUUAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MC6_116 not in the Motif Atlas
- Homologous match to HL_5IBB_210
- Geometric discrepancy: 0.1489
- The information below is about HL_5IBB_210
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
5MC6|1|m|A|31
5MC6|1|m|C|32
5MC6|1|m|U|33
5MC6|1|m|U|34
5MC6|1|m|U|35
5MC6|1|m|U|36
5MC6|1|m|A|37
5MC6|1|m|A|38
5MC6|1|m|U|39
Current chains
- Chain m
- A-site tRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain BQ
- Large subunit ribosomal RNA; LSU rRNA
- Chain c
- 40S ribosomal protein S23-A
- Chain l
- mRNA
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