HL_5MC6_120
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUUCGAGUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MC6_120 not in the Motif Atlas
- Homologous match to HL_5WWT_002
- Geometric discrepancy: 0.3213
- The information below is about HL_5WWT_002
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
5MC6|1|n|G|53
5MC6|1|n|U|54
5MC6|1|n|U|55
5MC6|1|n|C|56
5MC6|1|n|G|57
5MC6|1|n|A|58
5MC6|1|n|G|59
5MC6|1|n|U|60
5MC6|1|n|C|61
Current chains
- Chain n
- P-site tRNA
Nearby chains
- Chain AG
- 60S ribosomal protein L11-A
- Chain AP
- 60S ribosomal protein L42-A
- Chain BQ
- Large subunit ribosomal RNA; LSU rRNA
- Chain BT
- Eukaryotic translation initiation factor 5A-1
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