HL_5MC6_125

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

5MC6|1|BQ|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MC6_125 not in the Motif Atlas

Homologous match to HL_8P9A_148

Geometric discrepancy: 0.1808

The information below is about HL_8P9A_148

Detailed Annotation

Pseudoknot geometry

Broad Annotation

Pseudoknot geometry

Motif group

HL_22758.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5MC6|1|BQ|G|1680
5MC6|1|BQ|U|1681
5MC6|1|BQ|U|1682
5MC6|1|BQ|A|1683
5MC6|1|BQ|U|1684
5MC6|1|BQ|C|1685
5MC6|1|BQ|U|1686
5MC6|1|BQ|U|1687
5MC6|1|BQ|U|1688

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain BF

60S ribosomal protein L19-A

Chain BL

60S ribosomal protein L22-A