HL_5MDV_056
3D structure
- PDB id
- 5MDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.97 Å
Loop
- Sequence
- UGCAAUGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MDV_056 not in the Motif Atlas
- Homologous match to HL_5J7L_189
- Geometric discrepancy: 0.081
- The information below is about HL_5J7L_189
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 24
Unit IDs
5MDV|1|1|U|2324
5MDV|1|1|G|2325
5MDV|1|1|C|2326
5MDV|1|1|A|2327
5MDV|1|1|A|2328
5MDV|1|1|U|2329
5MDV|1|1|G|2330
5MDV|1|1|G|2331
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain E
- 50S ribosomal protein L5
- Chain M
- 50S ribosomal protein L16
- Chain W
- 50S ribosomal protein L27
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