HL_5MDV_077

3D structure

PDB id

5MDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MDV_077 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0668

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5MDV|1|2|A|320
5MDV|1|2|A|321
5MDV|1|2|C|322
5MDV|1|2|U|323
5MDV|1|2|G|324
5MDV|1|2|A|325
5MDV|1|2|G|326
5MDV|1|2|A|327
5MDV|1|2|C|328
5MDV|1|2|A|329
5MDV|1|2|C|330
5MDV|1|2|G|331
5MDV|1|2|G|332
5MDV|1|2|U|333

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain u

30S ribosomal protein S16

Chain y

30S ribosomal protein S20