HL_5MDV_103
3D structure
- PDB id
- 5MDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.97 Å
Loop
- Sequence
- CAGCCUGG(H2U)AG
- Length
- 11 nucleotides
- Bulged bases
- 5MDV|1|5|U|17, 5MDV|1|5|G|18, 5MDV|1|5|G|19
- QA status
- Modified nucleotides: H2U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MDV_103 not in the Motif Atlas
- Homologous match to HL_4TUE_033
- Geometric discrepancy: 0.1931
- The information below is about HL_4TUE_033
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_93616.2
- Basepair signature
- cWW-cWS-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
5MDV|1|5|C|12
5MDV|1|5|A|13
5MDV|1|5|G|14
5MDV|1|5|C|15
5MDV|1|5|C|16
5MDV|1|5|U|17
5MDV|1|5|G|18
5MDV|1|5|G|19
5MDV|1|5|H2U|20
5MDV|1|5|A|21
5MDV|1|5|G|22
Current chains
- Chain 5
- fMet-NH-tRNA(fMet)
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain E
- 50S ribosomal protein L5
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