HL_5MDW_011

3D structure

PDB id

5MDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

5MDW|1|1|G|329, 5MDW|1|1|A|330, 5MDW|1|1|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MDW_011 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.0731

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

5MDW|1|1|G|327
5MDW|1|1|U|328
5MDW|1|1|G|329
5MDW|1|1|A|330
5MDW|1|1|C|331
5MDW|1|1|A|332
5MDW|1|1|G|333
5MDW|1|1|C|334
5MDW|1|1|C|335

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain U

50S ribosomal protein L24