HL_5MDW_054
3D structure
- PDB id
- 5MDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.06 Å
Loop
- Sequence
- CUAAAGAGUAACG
- Length
- 13 nucleotides
- Bulged bases
- 5MDW|1|1|A|2268, 5MDW|1|1|C|2275
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MDW_054 not in the Motif Atlas
- Homologous match to HL_7RQB_054
- Geometric discrepancy: 0.0612
- The information below is about HL_7RQB_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19870.6
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5MDW|1|1|C|2264
5MDW|1|1|U|2265
5MDW|1|1|A|2266
5MDW|1|1|A|2267
5MDW|1|1|A|2268
5MDW|1|1|G|2269
5MDW|1|1|A|2270
5MDW|1|1|G|2271
5MDW|1|1|U|2272
5MDW|1|1|A|2273
5MDW|1|1|A|2274
5MDW|1|1|C|2275
5MDW|1|1|G|2276
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain M
- 50S ribosomal protein L16
- Chain W
- 50S ribosomal protein L27
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