HL_5MDW_059

3D structure

PDB id

5MDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

5MDW|1|1|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MDW_059 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.0575

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5MDW|1|1|U|2404
5MDW|1|1|G|2405
5MDW|1|1|A|2406
5MDW|1|1|A|2407
5MDW|1|1|U|2408
5MDW|1|1|G|2409
5MDW|1|1|G|2410
5MDW|1|1|A|2411
5MDW|1|1|A|2412
5MDW|1|1|G|2413

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15