HL_5MDW_104
3D structure
- PDB id
- 5MDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.06 Å
Loop
- Sequence
- G(4OC)UCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- 5MDW|1|5|U|33
- QA status
- Modified nucleotides: 4OC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MDW_104 not in the Motif Atlas
- Homologous match to HL_6CFJ_107
- Geometric discrepancy: 0.0884
- The information below is about HL_6CFJ_107
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
5MDW|1|5|G|31
5MDW|1|5|4OC|32
5MDW|1|5|U|33
5MDW|1|5|C|34
5MDW|1|5|A|35
5MDW|1|5|U|36
5MDW|1|5|A|37
5MDW|1|5|A|38
5MDW|1|5|C|39
Current chains
- Chain 5
- fMet-NH-tRNA(fMet)
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 4
- mRNA
- Chain 7
- Peptide chain release factor 2
- Chain n
- 30S ribosomal protein S9
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