HL_5MDY_022
3D structure
- PDB id
- 5MDY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- U(1MG)(PSU)(5MU)GAAAAA
- Length
- 10 nucleotides
- Bulged bases
- 5MDY|1|1|A|751, 5MDY|1|1|A|752
- QA status
- Modified nucleotides: 1MG, PSU, 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MDY_022 not in the Motif Atlas
- Geometric match to HL_7A0S_022
- Geometric discrepancy: 0.2908
- The information below is about HL_7A0S_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.1
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 11
Unit IDs
5MDY|1|1|U|744
5MDY|1|1|1MG|745
5MDY|1|1|PSU|746
5MDY|1|1|5MU|747
5MDY|1|1|G|748
5MDY|1|1|A|749
5MDY|1|1|A|750
5MDY|1|1|A|751
5MDY|1|1|A|752
5MDY|1|1|A|753
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L3
- Chain S
- 50S ribosomal protein L22
- Chain b
- 50S ribosomal protein L32
- Chain d
- 50S ribosomal protein L34
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