HL_5MDY_028

3D structure

PDB id

5MDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

UUAGAAGCA

Length

9 nucleotides

Bulged bases

5MDY|1|1|A|1070

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MDY_028 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3829

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5MDY|1|1|U|1065
5MDY|1|1|U|1066
5MDY|1|1|A|1067
5MDY|1|1|G|1068
5MDY|1|1|A|1069
5MDY|1|1|A|1070
5MDY|1|1|G|1071
5MDY|1|1|C|1072
5MDY|1|1|A|1073

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 7

Peptide chain release factor 2

Chain I

50S ribosomal protein L11