HL_5MDY_047

3D structure

PDB id

5MDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

5MDY|1|1|C|1870

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MDY_047 not in the Motif Atlas

Homologous match to HL_5J7L_180

Geometric discrepancy: 0.2281

The information below is about HL_5J7L_180

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5MDY|1|1|C|1868
5MDY|1|1|G|1869
5MDY|1|1|C|1870
5MDY|1|1|A|1871
5MDY|1|1|A|1872
5MDY|1|1|G|1873

Current chains

Chain 1

23S ribosomal RNA

Nearby chains