HL_5MDY_077

3D structure

PDB id

5MDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MDY_077 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0728

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5MDY|1|2|A|320
5MDY|1|2|A|321
5MDY|1|2|C|322
5MDY|1|2|U|323
5MDY|1|2|G|324
5MDY|1|2|A|325
5MDY|1|2|G|326
5MDY|1|2|A|327
5MDY|1|2|C|328
5MDY|1|2|A|329
5MDY|1|2|C|330
5MDY|1|2|G|331
5MDY|1|2|G|332
5MDY|1|2|U|333

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain u

30S ribosomal protein S16

Chain y

30S ribosomal protein S20