HL_5MDY_084

3D structure

PDB id

5MDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MDY_084 not in the Motif Atlas

Homologous match to HL_5J7L_015

Geometric discrepancy: 0.0692

The information below is about HL_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

5MDY|1|2|C|689
5MDY|1|2|G|690
5MDY|1|2|G|691
5MDY|1|2|U|692
5MDY|1|2|G|693
5MDY|1|2|A|694
5MDY|1|2|A|695
5MDY|1|2|A|696
5MDY|1|2|U|697
5MDY|1|2|G|698

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 4

mRNA

Chain l

30S ribosomal protein S7

Chain p

30S ribosomal protein S11

Chain z

30S ribosomal protein S21