HL_5MDZ_045
3D structure
- PDB id
- 5MDZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome (empty A site)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUAUUAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 5MDZ|1|1|A|1780, 5MDZ|1|1|U|1781, 5MDZ|1|1|U|1782, 5MDZ|1|1|A|1786
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MDZ_045 not in the Motif Atlas
- Homologous match to HL_5J7L_178
- Geometric discrepancy: 0.0595
- The information below is about HL_5J7L_178
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01962.2
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
5MDZ|1|1|U|1777
5MDZ|1|1|U|1778
5MDZ|1|1|U|1779
5MDZ|1|1|A|1780
5MDZ|1|1|U|1781
5MDZ|1|1|U|1782
5MDZ|1|1|A|1783
5MDZ|1|1|A|1784
5MDZ|1|1|A|1785
5MDZ|1|1|A|1786
5MDZ|1|1|A|1787
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L2
- Chain d
- 50S ribosomal protein L34
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