HL_5MDZ_051

3D structure

PDB id

5MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome (empty A site)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCCAG

Length

6 nucleotides

Bulged bases

5MDZ|1|1|C|2145

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MDZ_051 not in the Motif Atlas

Homologous match to HL_5J7L_184

Geometric discrepancy: 0.3342

The information below is about HL_5J7L_184

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79299.1

Basepair signature

cWW-tSW-R

Number of instances in this motif group

44

Unit IDs

5MDZ|1|1|C|2143
5MDZ|1|1|G|2144
5MDZ|1|1|C|2145
5MDZ|1|1|C|2146
5MDZ|1|1|A|2147
5MDZ|1|1|G|2148

Current chains

Chain 1

23S ribosomal RNA

Nearby chains