HL_5MDZ_055
3D structure
- PDB id
- 5MDZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome (empty A site)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUCGGACAUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MDZ_055 not in the Motif Atlas
- Homologous match to HL_5J7L_188
- Geometric discrepancy: 0.1431
- The information below is about HL_5J7L_188
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_11805.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5MDZ|1|1|G|2303
5MDZ|1|1|G|2304
5MDZ|1|1|U|2305
5MDZ|1|1|C|2306
5MDZ|1|1|G|2307
5MDZ|1|1|G|2308
5MDZ|1|1|A|2309
5MDZ|1|1|C|2310
5MDZ|1|1|A|2311
5MDZ|1|1|U|2312
5MDZ|1|1|C|2313
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain E
- 50S ribosomal protein L5
Coloring options: