HL_5MDZ_084
3D structure
- PDB id
- 5MDZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome (empty A site)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGGUGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MDZ_084 not in the Motif Atlas
- Homologous match to HL_5J7L_015
- Geometric discrepancy: 0.0654
- The information below is about HL_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
5MDZ|1|2|C|689
5MDZ|1|2|G|690
5MDZ|1|2|G|691
5MDZ|1|2|U|692
5MDZ|1|2|G|693
5MDZ|1|2|A|694
5MDZ|1|2|A|695
5MDZ|1|2|A|696
5MDZ|1|2|U|697
5MDZ|1|2|G|698
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 4
- mRNA
- Chain l
- 30S ribosomal protein S7
- Chain p
- 30S ribosomal protein S11
- Chain z
- 30S ribosomal protein S21
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