HL_5MDZ_104

3D structure

PDB id

5MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome (empty A site)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

G(4OC)UCAUAAC

Length

9 nucleotides

Bulged bases

5MDZ|1|5|U|33

QA status

Modified nucleotides: 4OC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MDZ_104 not in the Motif Atlas

Homologous match to HL_6CFJ_107

Geometric discrepancy: 0.0823

The information below is about HL_6CFJ_107

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

5MDZ|1|5|G|31
5MDZ|1|5|4OC|32
5MDZ|1|5|U|33
5MDZ|1|5|C|34
5MDZ|1|5|A|35
5MDZ|1|5|U|36
5MDZ|1|5|A|37
5MDZ|1|5|A|38
5MDZ|1|5|C|39

Current chains

Chain 5

fMet-NH-tRNA(fMet)

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain 4

mRNA

Chain n

30S ribosomal protein S9