HL_5MDZ_107

3D structure

PDB id

5MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome (empty A site)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

5MDZ|1|1|U|958, 5MDZ|1|1|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MDZ_107 not in the Motif Atlas

Homologous match to HL_5J7L_211

Geometric discrepancy: 0.1815

The information below is about HL_5J7L_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5MDZ|1|1|PSU|955
5MDZ|1|1|G|956
5MDZ|1|1|C|957
5MDZ|1|1|U|958
5MDZ|1|1|A|959
5MDZ|1|1|A|960
5MDZ|1|1|C|961
5MDZ|1|1|G|962

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain M

50S ribosomal protein L16