HL_5ME0_008

3D structure

PDB id

5ME0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S Pre-Initiation Complex 1 (30S IC-1) Stalled by GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

5ME0|1|A|C|330, 5ME0|1|A|G|331

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ME0_008 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1285

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5ME0|1|A|A|320
5ME0|1|A|A|321
5ME0|1|A|C|322
5ME0|1|A|U|323
5ME0|1|A|G|324
5ME0|1|A|A|325
5ME0|1|A|G|326
5ME0|1|A|A|327
5ME0|1|A|C|328
5ME0|1|A|A|329
5ME0|1|A|C|330
5ME0|1|A|G|331
5ME0|1|A|G|332
5ME0|1|A|U|333

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20